This germ is a parasite that can live in the digestive system. It is sometimes linked to digestion issues.
Update Date: 12.09.2026
By Mayo Clinic Staff
Blastocystis is a group of tiny parasites that can live in the digestive tract. Researchers don't fully understand the role blastocystis plays, if any, in causing disease. Some people with diarrhea, stomach pain or other gastrointestinal issues have blastocystis organisms in their stool.
Blastocystis organisms often live in the digestive tract without causing harm.
Blastocystis may spread through food or water. Contact with human or animal feces also may spread blastocystis. Blastocystis infection tends to be more common among people who live in or visit developing countries. People who work with animals also may be more likely to have the infection.
People with blastocystis infection also may be infected with other pathogens from contaminated food or water. These other pathogens may be the cause of the symptoms.
When it came to blastocystis, researchers used to label all infectious parasites Blastocystis hominis. Now it's clear there are different types or subtypes of the organism. To cover all the options, the parasite may be labeled blastocystis species or blastocystis spp. Spp. is an abbreviation that means multiple species. A blastocystis infection is called blastocystosis.
Symptoms that may be due to blastocystis infection include:
Watery diarrhea.
See a healthcare professional if you have diarrhea, belly pain or other symptoms that don't go away after a few days.
Blastocystis spp are single-celled organisms that you can see only with a microscope. Many single-celled organisms that live in the digestive tract are harmless. They may even be helpful. Others cause disease.
It's not clear whether blastocystis spp cause disease. Most people who carry the organisms have no symptoms. But they're also found in people who have diarrhea and other digestive issues.
Reasons why the effects might differ include:
Blastocystis may be spread by contact with infected stool. The parasite may be passed between people and from animals to people. Transmission may come from:
Blastocystis is common. You may have a higher risk of exposure if you:
Contaminated food or water is a frequent cause of blastocystis infection. But blastocystis may not be the cause of diarrhea and other digestive issues. Infection with other pathogens in the contaminated food or water may cause the symptoms.
If you have diarrhea associated with blastocystis infection, it's likely to go away on its own without treatment. But anytime you have diarrhea, you lose vital fluids, salts and minerals. This can lead to dehydration. Children are especially vulnerable to dehydration.
Good hygiene is the best way to prevent blastocystis infection. Taking the following measures can help lessen the chance that you'll become infected or spread the organism to others:
When visiting or living in an area with poor sanitation, take extra steps to help lower the risk of blastocystis infection:
Blastocystis is a group of parasites that can live in the digestive tract. Often they live there without causing harm, but sometimes they may cause symptoms.
If you have diarrhea and related symptoms, the cause may be difficult to diagnose. Even if blastocystis is found in your stool, it might not be causing your symptoms. Often another food- or waterborne organism is the cause of illness.
A healthcare professional may take your medical history and do a physical exam. You likely will be asked about recent travel and other activities. Lab tests can help diagnose parasitic diseases and other causes of gastrointestinal symptoms:
If you have a blastocystis infection without symptoms, you don't need treatment. Mild symptoms might go away on their own within a few days.
Medicines to get rid of a blastocystis infection and help symptoms go away might include:
Response to these medicines can vary greatly. People with blastocystis infection also may be infected with other pathogens from contaminated food or water. These other pathogens may be the cause of the symptoms. (3p5)
Because blastocystis infection might not be the cause of your symptoms, the treatment might help symptoms go away by getting rid of another organism.
You may start by seeing a member of your healthcare team. Depending on your symptoms, you may see a healthcare professional who specializes in digestive system conditions, called a gastroenterologist. Or you may see a healthcare professional who specializes in infectious diseases.
To get ready for your appointment:
Your healthcare team is likely to ask you questions, such as:
If your symptoms are related to blastocystis infection, they'll likely go away on their own before you even see a healthcare professional. Stay well hydrated. Water or drinks with minerals, called rehydration solutions, may help replace fluids.
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