Learn about this rare liver condition that affects newborns, usually requiring surgery soon after birth.
Update Date: 24.02.2026
Biliary atresia is a rare liver condition that affects newborns and infants. It occurs when the bile ducts become inflamed and blocked or fail to form correctly. Bile ducts are slender tubes that carry the digestive fluid bile from the liver to the small intestine. When bile cannot flow out of the liver, it builds up and causes liver damage, scarring and, eventually, progressive and severe scarring known as cirrhosis.
Biliary atresia appears in about 1 in every 10,000 to 20,000 live births, making it the leading cause of liver transplants in children. Babies with biliary atresia usually appear healthy at birth. The first sign of illness is often yellowing of the eyes and skin, called jaundice, and pale stools that last beyond two weeks.
Babies with biliary atresia should undergo a surgery called Kasai surgery. It also is called hepatoportoenterostomy. This procedure helps relieve bile buildup and slow liver damage, but it does not cure the condition. The surgery works best when done early in life, ideally within the first 60 days. The earlier it is performed, the better the outcome.
Although many children eventually require a liver transplant, a successful Kasai surgery can delay this need for many years. Some individuals may reach adulthood without ever needing a liver transplant.
Healthcare professionals sometimes describe biliary atresia as either syndromic or nonsyndromic, depending on whether other birth defects are present.
Healthcare professionals classify biliary atresia using the Kasai classification, which describes where the bile ducts are blocked:
Understanding the type of biliary atresia helps healthcare professionals decide what approach may offer the best outcome.
Symptoms of biliary atresia usually appear during the first few weeks of life. Most babies appear healthy at birth. But as bile becomes trapped in the liver, signs of illness gradually appear. Symptoms usually appear between ages 2 and 8 weeks.
Common symptoms of biliary atresia include:
Typical newborn jaundice is caused by a temporary buildup of bilirubin and resolves on its own. But jaundice from biliary atresia results from blocked bile ducts and ongoing liver injury. Persistent yellowing of the skin and eyes, pale stools, and dark urine should always prompt medical evaluation. Because many healthy babies also have mild jaundice early in life, recognizing when it persists or worsens is critical.
Scientists don't yet know exactly what causes biliary atresia, but research shows it likely begins before the baby is born. There is no evidence that biliary atresia is inherited or caused by anything a parent did or didn't do during pregnancy. It also isn't something a child with biliary atresia will pass on to their own children.
Researchers believe biliary atresia may be triggered by a mix of factors. These include problems with how the bile ducts form during pregnancy, certain genes, and possibly infections or toxins that affect the baby in the womb. The more-common type appears in healthy-looking babies during the first few weeks of life. A less common type happens alongside other birth defects, such as heart or spleen problems. This less common type is called embryonic biliary atresia. It's also known as syndromic biliary atresia.
There are no proven, consistent risk factors that predict which babies will develop biliary atresia. Most cases appear sporadically, meaning they happen by chance in otherwise healthy infants with no family history or known cause.
In most cases, biliary atresia cannot be detected before birth. Routine prenatal ultrasounds usually look healthy. On rare occasions, a small or missing gallbladder may be seen, but this is not enough to confirm a diagnosis.
Diagnosing biliary atresia in a newborn involves a combination of lab tests and imaging studies. It is usually confirmed through a liver biopsy or a special imaging test done during surgery under anesthesia, called intraoperative cholangiography. The process usually begins when a baby's jaundice lasts longer than two weeks. While jaundice is common in newborns, persistent yellowing of the skin and eyes can be a sign that bile is not flowing properly out of the liver. Healthcare professionals use several tools to figure out whether biliary atresia is the cause.
One of the first steps is checking the baby's bilirubin levels through a blood test. Bilirubin is a yellow substance made when the body breaks down old red blood cells. The liver usually turns it into a water-soluble form, called direct or conjugated bilirubin. This bilirubin is released into bile and leaves the body through the intestines.
In babies with biliary atresia, the bile ducts are blocked, so direct bilirubin builds up in the blood. This can lead to symptoms such as jaundice, dark urine and pale stools due to the lack of bile reaching the intestines.
Healthcare professionals are especially concerned when direct bilirubin is over 1.0 milligrams per deciliter (mg/dL) after two weeks of age in babies. Other lab values that may not be within standard range include:
Healthcare professionals also may use a newer blood test called matrix metalloproteinase-7 (MMP7) to help support the diagnosis. MMP7 is a protein that is often much higher in babies with biliary atresia than in those with other liver conditions. While promising, this test is still being studied and is not yet used on its own to make a final diagnosis.
Once blood tests raise concern for biliary atresia, health professionals use imaging to take a closer look at the liver, gallbladder and bile ducts to help confirm the diagnosis.
Ultrasound. If the lab results suggest bile flow blockage, the next step is usually an abdominal ultrasound. This test uses sound waves to create images of the liver and bile ducts. On ultrasound, signs of biliary atresia may include:
A newer ultrasound technique looks for a short bile duct just outside the liver, called the duct at the hilum. If this duct isn't seen, it may point to biliary atresia. The test can be done while the baby is feeding and takes only a few minutes. In one study, this approach accurately identified all infants with biliary atresia and most without the disease. Results from this study suggest that this approach may reduce the need for more-invasive tests such as liver biopsy or intraoperative cholangiogram.
Hepatobiliary iminodiacetic acid (HIDA) scan. This imaging test shows how well bile moves from the liver into the small intestine. A small, safe amount of radioactive tracer is given through an IV, and a special camera tracks how the liver and bile ducts handle it.
If the tracer doesn't reach the intestine, it suggests that bile isn't flowing as it should. But that can happen in several liver conditions, not just biliary atresia. Likewise, some babies with biliary atresia may have a typical HIDA scan. Because of this, the HIDA scan is used together with blood tests, ultrasound and sometimes a liver biopsy to help medical professionals understand the cause of a baby's jaundice.
If imaging and lab results suggest biliary atresia, healthcare professionals may recommend a liver biopsy under anesthesia. This involves taking a very small sample of liver tissue to examine under a microscope. In biliary atresia, the biopsy often shows:
These findings suggest bile duct blockage, most commonly biliary atresia. But they also can be seen in other conditions.
If imaging and biopsy suggest biliary atresia but the diagnosis is still uncertain, healthcare professionals may recommend a minor surgery. During this procedure, surgeons perform an intraoperative cholangiogram. This involves injecting dye directly into the bile ducts and taking X-rays. If the dye does not flow into the intestines, this confirms the diagnosis.
In the same surgery, healthcare professionals may go ahead with treatment by performing Kasai surgery to help drain bile from the liver.
Several other conditions can cause jaundice or pale stools in infants, so it's important for medical professionals to rule them out:
Babies with biliary atresia need early treatment to protect their livers and help bile drain properly. Treatment usually involves surgery. For some babies, treatment is a liver transplant.
The Kasai procedure, also called a hepatoportoenterostomy, is the procedure of choice for biliary atresia. This operation creates a new pathway for bile to leave the liver by connecting the baby's intestine directly to the liver, bypassing the blocked bile ducts.
To perform the Kasai procedure:
The Kasai procedure works best when it is done early, ideally before 60 days of age. Performing the surgery within this window gives the baby the best chance of restoring bile flow and avoiding or delaying a liver transplant.
Even when the surgery is successful, children still need regular follow-ups. Over time, most children develop liver damage and require additional treatment, including the possibility of a liver transplant later in life.
Around 60% to 80% of children with biliary atresia eventually need a liver transplant. A liver transplant may be needed:
Some babies need a transplant soon after diagnosis, while others may live for years before needing one. Transplants can offer a long-term solution when the liver no longer functions well.
Even after surgery, children with biliary atresia need lifelong follow-up with a liver care team. This includes:
With early treatment, good nutrition and medical follow-up, many children with biliary atresia go on to live active, healthy lives.
Learning that your baby has biliary atresia can be overwhelming. You may feel worried, sad or uncertain about what comes next. With time, many parents find ways to cope and feel more confident in caring for their child. These ideas may help:
If your baby has yellowing of the skin or eyes, called jaundice, that lasts longer than two weeks, pale or gray stools, or dark urine, make an appointment with your baby's healthcare professional right away. These may be early signs of a liver or bile duct condition, such as biliary atresia.
If the healthcare professional suspects biliary atresia or another liver condition, you may be referred to a specialist in children's digestive and liver diseases, such as a pediatric gastroenterologist, or to a pediatric liver or transplant center for further testing.
Because appointments can be brief, it helps to be prepared. Here's how you can make the most of your visit.
Don't hesitate to ask any other questions that come up. Understanding your baby's condition can help you feel more confident and supported.
Be ready to answer questions such as:
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